NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135222_1007494

Scaffold Ga0135222_1007494


Overview

Basic Information
Taxon OID3300029301 Open in IMG/M
Scaffold IDGa0135222_1007494 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRH1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)792
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F058199Metagenome / Metatranscriptome135N
F090483Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0135222_10074941F058199N/AGPRIVSQSRSMGVGYPVPCSFTFSFEVFIMFKLTLITVECCVDGYHNDTEITFGKSPKECWDKMRGPNHGQRINRGGCPLGYGGTPVLCCERLEKNGKVIKEIWD
Ga0135222_10074942F090483AGGAGMHEELKKLEDAVIDCFMVPNEWLPEAYRGKRSHRSLKSVVKQARKRGAIETEHQELKRIKAEKIAKYSAEFAEKGSFTYEENADKLYRNQMTFCTLMGVELD
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