Scaffold Ga0135227_1030322

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0135227_1030322

Scaffold Ga0135227_1030322

Overview

Basic Information
Taxon OID	3300029302 Open in IMG/M
Scaffold ID	Ga0135227_1030322 Open in IMG/M
Source Dataset Name	Marine harbor viral communities from the Indian Ocean - SRB3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Michigan State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	597
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED203	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location Name	Indian Ocean
Coordinates	Lat. (^o)	3.715	Long. (^o)	105.408333	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F082547	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0135227_10303221	F082547	N/A	LLNFYIIPFYVSQSRSNGVLLMEEESYADIIDAYLSGVGVVEGESLTDYIKRNNIKIKEIQTEDLTRGRPMEEEGIAQLASAKKIDPSVTMKFIVEEFIKRKGRRPRSIDELKEFYFEMSSGGKGRSDMMMASYEPGKYSDDEIEMYENYKYDMNEQRPGMPIMEIDDFLRMEYAQARAGVQAGGLPGILGV

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