NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135227_1031364

Scaffold Ga0135227_1031364


Overview

Basic Information
Taxon OID3300029302 Open in IMG/M
Scaffold IDGa0135227_1031364 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRB3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)3.715Long. (o)105.408333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038195Metagenome166Y
F066266Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0135227_10313641F066266AGGGGGMSILNEHELERKVVSTVKEKIQEALAYRSYNKEGQKERKDYRKTIRDAKDFDELKKIMSEFVDDLMHI
Ga0135227_10313642F038195AGGAGGMKLHKDFYEYKTIPFTYFKKVANRYDFKREWVSVRCQEDIMKQQPQNVEIRRLKKNV

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