NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135227_1033842

Scaffold Ga0135227_1033842


Overview

Basic Information
Taxon OID3300029302 Open in IMG/M
Scaffold IDGa0135227_1033842 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRB3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)3.715Long. (o)105.408333Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009959Metagenome / Metatranscriptome310Y

Sequences

Protein IDFamilyRBSSequence
Ga0135227_10338421F009959N/AMTEKEVIDKICDRVITVLYNELDYYMFEELGYTETDDKYVEDADKLLVKIIKELTE
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