NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307249_10267181

Scaffold Ga0307249_10267181


Overview

Basic Information
Taxon OID3300029305 Open in IMG/M
Scaffold IDGa0307249_10267181 Open in IMG/M
Source Dataset NameGoal Fecal Pellet Co-assembly of all three pellet samples and three diluted pellet samples.
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4483
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales → Lachnospiraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Mammals → Digestive System → Large Intestine → Fecal → Goat Feces → Determining The Genomic Basis For Interactions Between Gut Fungi And Methanogenic Archaea

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.4204Long. (o)-119.6671Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F100397Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0307249_102671811F100397GGAGGMMKKLIAILALSLSLILCLTACGSKMPYDLSGTASVELHAYDNDSTEPFAKIVVDGEDVATIVEMFNSLKLKEMKYTEPSINGYDFWFKDADGNEIAKLSLPYDPSPWVVVGATAYQDVNGGIDVDYLAQLVDMTVSAGPMQPEDGADHNAPVEPLFYKSAPGLSVQHD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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