NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135226_1023925

Scaffold Ga0135226_1023925


Overview

Basic Information
Taxon OID3300029308 Open in IMG/M
Scaffold IDGa0135226_1023925 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SRB2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)592
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)3.715Long. (o)105.408333Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027158Metagenome195N

Sequences

Protein IDFamilyRBSSequence
Ga0135226_10239251F027158GGAGMATTTKTPITELTLAEVISLTQAGLIGLKDGAPAYTDKADRAAKAGATKARRQAVLSEVTEFFASPRGQKAKFFSVKPTSGMFAACAVAINQNVEASREDILWSLKQLEKKGLAKQVGIKGQVVGEDRGIEKKVMVIVPVSEVNNFQIVTGKPEDI
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