NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000039

Scaffold Ga0183683_1000039


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000039 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)82517
Total Scaffold Genes158 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)63 (39.87%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004325Metagenome / Metatranscriptome443Y
F090494Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_1000039117F004325N/AMKKKKSTTEKADQFLTGLGTAGGAIGSPQLVGFGGTDVQKQVMSGNVDEYQNVRMRQAEINIGESIPMPPDLDASYLKLNLPGSPLPANGLLARNNVIRAQQTQDLIMSQGQMFLTQYLPAAGLSKLPVGQPPLESRKGKK
Ga0183683_1000039133F090494GAGGMATKHTESMKAFQNKYNLSFQNFFTFTNPKIEKNNKIEEIPTACLMLMNTPKACPAAGSCRSVCLITSGNPIYKDGKMKCRLRRNNAFMQDYQMFLRYLVINCFKHYFKNKNASKVAFRMNGVSDYPFESISVQLTQEDTDYIQKAFNIYIEPIRYGSVIEAVQKGLDLDNNQVLRNFVQFYDYTKRIDRDFKKANELNYHLTLSHGSKFDTFSKAVEEGLNYAAAFNLKKSQPLPKTFNYQGKELIVVDGDVSDCRFLDLNNDTHIIGLRFKIVENKDNAKKLEFCIDTRS
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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