NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0183683_1000084

Scaffold Ga0183683_1000084


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000084 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)56835
Total Scaffold Genes94 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)66 (70.21%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029563Metagenome / Metatranscriptome188Y
F056174Metagenome138Y
F081368Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100008449F081368GAGMIKSNSEAFRDWVKEMDKVLSETQNLTIDGQPMEASDDHFKSQTKNLAKVPLVLDGQAVYPLNDWTASDLVHSEIDAKNTELE
Ga0183683_100008464F029563N/AMKTFNITFVEETKSQVRIEAETLEKAKEIVNSGNFSGDEIIDRDHFEITDAYEDEGEDQ
Ga0183683_100008481F056174AGGMRSEKQKKRKGLSGGVRYGPPPKKGPNPQGIKVSERKKLLRKLAGKV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.