NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000223

Scaffold Ga0183683_1000223


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000223 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33161
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (65.31%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F002716Metagenome / Metatranscriptome535Y
F013639Metagenome / Metatranscriptome269Y
F018155Metagenome / Metatranscriptome236Y
F037180Metagenome168Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100022325F037180AGGMSDLAKIDDKSILHISLSYLIQIIAVISIAVWGYASIAEKIEKNKQELKNLRGNQNNYIFPDIRTLEKQVIKLEKEVLILKTEIEAIKKND
Ga0183683_100022327F001942N/AMTKKTSEQHQSNSRLGALGESLVQTFLLEHCDWCYPTQEKHPADLLVELGSAKFTVQVKTRRETKEGKYVFATENSRNMSEVYKQYHCDIFAFVFVSDSAKRIKFQPNNTSQTYYTFNNKHINPTLEIDTLQETLNQLSSVPVINKL
Ga0183683_100022336F018155AGGMSQNKEAVEKRRKELAQEKLDKQIKYIYFQKGAGEHYEEVAYMSGRIVRTDYGQL
Ga0183683_100022348F013639N/AMKIDKDKLQEKIKQGKSSHDVAMTFGCHPSTVRRKAKELGLKFKTKSYWRKYES
Ga0183683_10002239F002716GGAGMSQYRLETEEDMSSYLDINFGHGVSAVYTVGGSSTTINIIINNEYVEQVEGTGVEALKPIAYCRTIDVPNIAFGNTLNVSAIKDVDGNTLKAAQNYTIVNVQSDRTGFSALMLEEI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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