NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000322

Scaffold Ga0183683_1000322


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000322 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28399
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (65.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051146Metagenome / Metatranscriptome144N
F057329Metagenome / Metatranscriptome136N
F061782Metagenome131N
F062776Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100032210F051146GGAMTKDEFIYWTGWLKVRWPNAQLGEFTVKSLYKDFELFDDDVFGKVLLDYFDSGNEFLDWSKIKKRCKEYQTQVFSDKAQQIREQKSLKDKAIDPPSSLQSYLKMLGYKTFAEAVFYKTKDLYRYGGLRDWQRKLFEPYRKLSYDEAKTKGWRYGIGIEIDDRRK
Ga0183683_100032214F062776AGGAGMDKYSNPDVFIVLGGFVAIFLLGALLGEVAIFIAKMLGYEDVADQPNVDFMQRLQDGEVLNADNMFIKE
Ga0183683_100032220F061782AGAAGMKKIYNGIIAILKETAAQTFTILGFAISWFLLTGTAKDIVGIMILISFGVWFATINFRK
Ga0183683_10003225F057329AGGMNAGYDDVKELVMYVMGLNDWLQDREPVEPDAKNNSLGGMNFTINWLDHTKSRYCIRLNTDNTYDMQIFQYQNYKQLGLAIERSLPRESILMLLSTTYQEITSQSNQVLDNLKFEISKETQEILKKQN
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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