NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1000347

Scaffold Ga0183683_1000347


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1000347 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27161
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (90.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034389Metagenome175Y
F037707Metagenome / Metatranscriptome167N
F053653Metagenome / Metatranscriptome141N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100034718F037707AGCAGMEKIVDRLASGETLVDITKDKAMPSYRAVTRAVAADEELWSLYRKGRILQAEYYADKINGLAMEPLPEGDVRFLNAEVNRRRLEIDTLKWTTARNQPFGIRDKKEDQPQAQTFTISWSGGDTAVNAHDDEEVLH
Ga0183683_100034719F034389GAGGMNLYKEAMSIAKEAYEETCCFDEAYDRIHEICDNHEISIYYGKAINFCAEQHTYRGEEYLEDCGGIAQDGDTFGSIACRIAFATLLVASQDALSELQDDMEAA
Ga0183683_100034729F053653GAGGMGIRKTDWADRFNYKWHSNPSTPDAWTFFDKSVLRPMRDKAWAILRGDIEGDQGWARKVLYDSAYYKDPQGKTQYSDNTNMVSGRAVQVYTDMLLVEDADVTEAYGEAINMLHGYEPPYWHDHDVDKAVLAHRENICYDAEGKKSKEPTMAEFSLVCENAASGIREAMSGANRIGGEIELHGNIPHCELPYFGKPDYGEGRVELKTQWDQQAHTDSPRANSLPKKIKAPHITQLAGYWYLSKIVPKIVYANRLGYVVLQPTEQELEHALHDISVACRRREKLMKVADDVVDLLNLTDPHFADSFVWRDLAPEFFMMAKGLFGKR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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