Basic Information | |
---|---|
Taxon OID | 3300029309 Open in IMG/M |
Scaffold ID | Ga0183683_1001692 Open in IMG/M |
Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | CEA Genoscope |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 8737 |
Total Scaffold Genes | 24 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | South Pacific Ocean: TARA_100 | |||||||
Coordinates | Lat. (o) | -13.0023 | Long. (o) | -95.9759 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F018831 | Metagenome / Metatranscriptome | 233 | Y |
F018932 | Metagenome / Metatranscriptome | 232 | Y |
F031501 | Metagenome / Metatranscriptome | 182 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0183683_100169220 | F018932 | N/A | LKSNRATRHQEIYKRTENGLELVLPKKISSDIGFQLMFGYREDYRLEQEKIQKNADRYFIKTYLDVEDFKKYI |
Ga0183683_100169221 | F018831 | N/A | MKIIASVSIEIKLDDTELLDDAKDRAVDTLINNLDDWLNNNGIPPIISIEYKLPEHHDNDLEFLN |
Ga0183683_100169224 | F031501 | GAG | MKIHYELLDLFDEAKRIIDKQEELIKMQQSLINTILQGLQGVELNELLLKKQVADLQEELEIITKDYVDVMGGGQKV |
⦗Top⦘ |