NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1001699

Scaffold Ga0183683_1001699


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1001699 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8685
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018403Metagenome / Metatranscriptome235Y
F021555Metagenome / Metatranscriptome218N
F023481Metagenome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100169912F021555AGGAMDTLHITKPELHIFIDAEIEKYKSKKGRAFFYKKPKRLEVVGEKRIMRFDTKDRQFQIDGATGKRLYKKGGKRTTTQEHNMLVTDLDIQEGYKFRNVPMNQRLRYLLIGKKCLKFSYLADSDSFKVEFPKATRTLLKNLYAKNFEDFEQKGDV
Ga0183683_10016992F018403N/AMDKQKTKISDSSKQEQLTMIDNIVIGTSEIGNKRIQLTKMIVNAVKNGKVTLKYKDKITGLTRHFEKLNKITNADIRGFVECYKEWLGVETDPTWNSKTDTGKERLRILKDSFWVALPSIKNDCLEKNKSGKEFTGNKNSEVFVNGEFAKKYSPNPMHSKEADQVTMKFSELKKASQNYLNDKSTNLNSDESASKDNSFVVSIKKLTRSINASKDELVLTQKDQQPGTEQAIKHLETACVKWSIEFNKVRQSNMTPEQVARLSQRK
Ga0183683_10016993F023481GGAGMITKNKTSIENELKKLNSNFNTFNKIMSSFLVIATSESTFKNKSNKEIKTIVPVVSSTLKAINDSIYNN
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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