NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1003730

Scaffold Ga0183683_1003730


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1003730 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5142
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (27.27%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR1-KM17-C101(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009889Metagenome / Metatranscriptome311Y
F036974Metagenome169N
F037984Metagenome167Y
F042076Metagenome159N

Sequences

Protein IDFamilyRBSSequence
Ga0183683_10037305F009889N/AMRIYSLICVLTLFSCSANYHYRKALKRGLEPLISSDTIRIATIDSIPVVKHDTIVYEKYFSSKDTIVHYQNVFVPKTRLETRIEYKIHRDTIRMETRVEVQKAKASKKPNYMWLIIGLCIVGGFLFIVGKVVNKYV
Ga0183683_10037307F037984N/AMNRTEKLELLLEIEEAIQHFEKRIDDAEWSNGFGLGLEMPNIKKKNEHNIVIYGMCIGRLNERFTKQLNALK
Ga0183683_10037308F042076GGAMKGEIEIFKNEDDIVEFGIHDTSFRVCIETETYWQEEAVSFNGFTDEIQYEEHEQTVTFVRMDTLECHGTMYYSKQDICSELERMLNEEN
Ga0183683_10037309F036974N/AMNDPFKLEFWDNFNDSLYFDYLLKREEMLKTYRITYKQYAGSDTNAPVSYAIKYLKAYNKHDAINAFKLWKGLIIKVELCD
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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