Scaffold Ga0183683_1005056

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1005056

Scaffold Ga0183683_1005056

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1005056 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4110
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F005026	Metagenome / Metatranscriptome	414	Y
F026871	Metagenome	196	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10050563	F005026	GGAGG	MFELLTLFLTGGGSAAMGSILKGVFGAITDARQQKYEMEMARECRNNEFALKFQAALNSGPGGAFTRATRRMLALIGMFTLSFITCITTLFPSVPLVSITNITGEGKKEFLFGLISFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR
Ga0183683_10050564	F026871	GGA	MFAGVGVALSILAFFIKRNKWELEKMNDRLRQLEIANAGQSKDLAHLTKLAEDRREDVKNLFKRLEDK

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