NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1005110

Scaffold Ga0183683_1005110


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1005110 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4075
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001407Metagenome / Metatranscriptome702Y
F001660Metagenome / Metatranscriptome655Y
F007667Metagenome347Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_100511012F001407AGGAGGMNTIRRDQRRLDNIANMYWKTSGEMREMWGRKWYELIKKIGRKLDESSNERSTADTRQIH
Ga0183683_10051104F001660AGGAMADPAKYKSLSVPREDWEQLGVLANKTNRTRSKMIGRLIRFFMDNKGVKSNGKSNKNS
Ga0183683_10051108F007667N/AMSWRKKEIEMVNELNEKVFSKDPLRVVSTAYYSLDVINSNYIKELKNREKYNPQDFDGSLIEKHKYDYLKRSCGDRIPGYICRFRDGSYWAWNLNKVEPVWYKKDLPTTTHFENNNFKSKTIGDLKLKDGVKLI
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