Scaffold Ga0183683_1005418

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1005418

Scaffold Ga0183683_1005418

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1005418 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3886
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (91.67%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013377	Metagenome	272	N
F021206	Metagenome	220	Y
F047360	Metagenome	150	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10054185	F047360	AGGA	MKFDCIINMDNDAFAHDPHYELSKIIKKIAKEVDEFVCSERTKTIWDNNGNKIGTWEIKG
Ga0183683_10054186	F021206	GGAG	MTVTLNQLLEIENVLATRKIPSDIEAVTNWKYFSDSKEQWLTLGEQPLHYVLRILTKKDFKAWQLDKGK
Ga0183683_10054188	F013377	GAGG	MTKKILKHWALFYKHGERQFISAPTRQELDSAIFGGAYAPSPNNVTYYVEYERDIKDTRYNQVYEV

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