Scaffold Ga0183683_1007141

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1007141

Scaffold Ga0183683_1007141

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1007141 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3167
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F022311	Metagenome	215	Y
F032077	Metagenome	181	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10071413	F022311	GAGG	MARSLTDESYDPIYDQIRGILGEHFENYCFIVMDEQGELFYDYNHLPAGRMLLHEMQLEIGDDNIEIEWEFESDPDDPEDDAVD
Ga0183683_10071414	F032077	GAGG	MGTDIDSKETSIDLKDRMRDALAPMLAMEQERTAKNSLANNNPQRWLAAASMFLAGSSMHDVKKELDMHHYIARRINGIVKTCDEARVFRQERAMQLASTIDEISSIGEKIAASYLDGSAEAEEKIKKAETKDLANLAVAQEKLHRTFDNVTGNNVQKIEVRHITTPEEAMSLIDSLPEAEVIDVEGDG

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