Scaffold Ga0183683_1009160

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1009160

Scaffold Ga0183683_1009160

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1009160 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2621
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-KM24-C165	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013362	Metagenome	272	Y
F075988	Metagenome	118	N
F078605	Metagenome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10091601	F075988	N/A	KLSQWFIDYMKDKKCKTFNQGGVDLSKNDPNDNWSALNPFRDSTILSDKVIEFINEKNLSGIKSSMDLVEQQSDKATKEQRELNTINRGTNE
Ga0183683_10091604	F013362	GAG	MSSEKQLILILLTAVVVLGYQCYKDKKKNDYWKKYRRSQGWD
Ga0183683_10091608	F078605	N/A	YIGLFEEADLNQKVKELKKLIKEKNDYIKILDKEIDTLKGQIDLRDLEIEMLKKNNG

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