Scaffold Ga0183683_1010003

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183683_1010003

Scaffold Ga0183683_1010003

Overview

Basic Information
Taxon OID	3300029309 Open in IMG/M
Scaffold ID	Ga0183683_1010003 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2444
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	South Pacific Ocean: TARA_100
Coordinates	Lat. (^o)	-13.0023	Long. (^o)	-95.9759	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F006792	Metagenome	364	Y
F032871	Metagenome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183683_10100033	F032871	AGG	MAYDLKNVFYLDTQATITKDTAGIGSAQLDLSAYIDPIARGRQKGTGLAIYKAHFSVTNSEDVNEIATKVTDEGVMAVSLAAGLGIGDLATGGSQQAAGIGSTTNFDVSSQLLVSGGMFYAPGSAATSTPVMDMYCEPSEKVPYVIVRDNVCLVYCVSTEKKFTSTSTLAVRLECAQITLDQATLNQLLRTQTV
Ga0183683_10100034	F006792	AGG	MSEKKFSFGSNPNMREVPPGTEAKFQFNGSPSLVDTEWGEKISFPILLISHDSYDSLPIKCNWESKSQVAKELLEAHKKGDNKDFLKAYKDSKWQLTRFDTGSYWIDQL

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