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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300029309 Open in IMG/M |
| Scaffold ID | Ga0183683_1010878 Open in IMG/M |
| Source Dataset Name | Marine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | CEA Genoscope |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2291 |
| Total Scaffold Genes | 2 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | South Pacific Ocean: TARA_100 | |||||||
| Coordinates | Lat. (o) | -13.0023 | Long. (o) | -95.9759 | Alt. (m) | Depth (m) | 5 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F041141 | Metagenome | 160 | N |
| F059123 | Metagenome | 134 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0183683_10108781 | F041141 | AGGA | MDNLPQENEKKIIKLEGELKLIHHKIDVIRDNHLHHL |
| Ga0183683_10108782 | F059123 | N/A | DLAVTAFTAPFIGTGAIPAGAAAAGIGEYARLKIGQVAYDINKTNPDGSEITDTQLANEAFKTAGISAAFGYGGLGTAKIIKGVNNIIKGRIQSKDFVDLVNTKTEAEDIAKTINDKLTEGKLNTKLRFKTSQALNDPDLMAAQEVFEKSNRLGYVGDFKRANTNEMNALNDYFSLLRSEFDPKGLYTNQNQYDFGNLVQGVIRKRNEPQIKSLIKQQENTQNLLNQTINELPNGTKVATGVNVRSAIEDTRKIFKKNSDAALRKLNEASGGVQIQTDIIGNALKTLQKQGKDNIFNSAESSLVKNVKNKNILEGKVNAPVTTLRNAMSYLNRQIRKGEKGLTTEDIDVGALKFMVGEINKQVRRDAPDSFVNAFDIFNDVYAKGKSKLDDTIIADVMKIRNKQLVYGDEAVFDLTFKKGLNSKKVADDLYDVIKDYPDAMLAYKSSINDFYKKEVIDNGKVNVNKHKTFLKNFEDKLKVFFNPKEYEKIKKIGGLQETINNIEKNRDTLIKNLSKSFEGKLESSTPGELVNKIYRPNNIGEIRQLKKILEKDPEIFEAFKTNVMKDLNERVTVKSGSLGMDVISPERFKQYVYGSGGEKGYQFAMREIFGNKFMADIKTLNDALQITSRTAPASLQREGVYGNFFTDIIRARVGQFTPTGRLLTAGKRIYTRSSNAILKNAILNPESLKDLVKLKTLKKSSAEAAYILGKLNGMIFLDPTQG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |