NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183683_1019575

Scaffold Ga0183683_1019575


Overview

Basic Information
Taxon OID3300029309 Open in IMG/M
Scaffold IDGa0183683_1019575 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_100 - TARA_R100001440
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1410
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameSouth Pacific Ocean: TARA_100
CoordinatesLat. (o)-13.0023Long. (o)-95.9759Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009699Metagenome / Metatranscriptome314Y
F019909Metagenome / Metatranscriptome227Y
F020115Metagenome / Metatranscriptome226Y
F032639Metagenome / Metatranscriptome179Y

Sequences

Protein IDFamilyRBSSequence
Ga0183683_10195751F020115N/AMTYEQFEILRQWADRVANTANDTDTNIRSIDLVHDIAGILADDEHFIPRL
Ga0183683_10195753F009699N/AMITEDLNLQDMMTDKEAQAFMQKVDSSAPFWQELHDEDAPTIQIQGNTTPRCLYNLMVTKRDVNLYLHGIKPHRGWKIGDVKAYFGLKGGKQKIADAINAIHSEIIGRFKEQNNEETTD
Ga0183683_10195754F032639N/AMKKRLINDDGFYVGSELKWGMDDVRNVLERFGRATTTSKEDVERILIASFQDNYRLMETIDEAIGDTIAFMIDEKQLNNDEV
Ga0183683_10195755F019909N/AMTKFEQHIGEQIPQEVLDYMASRTIEQIERQAQKLKFDSWCPVVMENDSPELRKQLKQASDLLFQWIDFQSVTK
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Institute for Fundamental Biomedical Research
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