Scaffold Ga0185543

Basic Information
Taxon OID	3300029318 Open in IMG/M
Scaffold ID	Ga0185543_1006311 Open in IMG/M
Source Dataset Name	Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300029318 Open in IMG/M

Scaffold ID

Ga0185543_1006311 Open in IMG/M

Source Dataset Name

Marine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

CEA Genoscope

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3081
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Scaffold Components

Scaffold Length (bps)

3081

Total Scaffold Genes

3 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Novel Protein Genes

2 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Pelagibacter phage HTVC034P

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Indian Ocean: TARA_038
Coordinates	Lat. (^o)	19.0393	Long. (^o)	64.4913	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Indian Ocean: TARA_038

Coordinates

Lat. (^o)

19.0393

Long. (^o)

64.4913

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F081776	Metagenome	114	N
F082527	Metagenome	113	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0185543_10063111	F082527	AGGA	MTTLTTQLEALEKGGFSSEEISAWKQDKILTLENAGFESNEILAEFGYEPIDKGPIKKIWDNIINLGKEETKSTYEKLLEVEKNEPDNTSLKEKLVGEVFEVEKYWDRGFNMGIIDLIQNYHQLPGNDGTGLPDGYVLEPFEDTGIIERNIQNLAVITKDLPVYLTGALLTNLLTWGRAGKTGTAAGSGFIAGSIRETYLNMLEEGKVHSWSEFWDIYTKEGVKAGAKEAIQLGSAFKLGSFGKNFLSKLLLRVGGFEGSGAIIEQELPSKDQLIDSTLLFATFGLAESGGAKVVNTIKKTNNNAIDIVTDYVADKTVVEDLSSKNIRI
Ga0185543_10063112	F081776	AGG	MPKIPTYDIKGRITAETGSTGAIPSISPTENIYRATKSVSDFFVNEYVQEKKLEADNKAYQLLSDMYIDQKDGEGNVIQKGLFTIQSETKKNGNPSDAAIFHDTQVNSLYNYFKNNKFGKIDNFTIKAIEKKFYSTAGILKTKALEGSRTEQITLSKDIDEDYISKEALVLKDVGPAYIEIYTSKVIDKINSNTNYDEGQKKILIKAYNQFGVTTLAESMATAQPFAFKEALEAGKFDLLSAEQKITLSATADKNILQSKFQVLTGALDLPPDAAPALLSRAYDEIAKGTFGGNEELVNLYNSLSATEQTEFKSFFNKKARAKRTDMQFSILAQNQIIQAETALQSKELLEEIDKKNGVFDQQIEQLFGNTPVIIEQFKSLNEKIVNTKGKSVSSFDANSKIINLIVNDEINQVTDKFLLPGETGEGKSIIERYEDGVNLQDLKFLSSIIDSQNKNPNTYSEMKTFFEFIDYYKMPVQGSPVLVGIDSGLDDRLNNFKYVMYSRYINGIQNGIPAKTLTDPTKKEFIGKDVLNFMPNANKVFKEIVDQIKKNKTFNPETDAKRLPGETTEEYLKRIGLSK

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0185543_1006311

Overview

Ecosystem & Geography

Associated Families

Sequences