NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0185543_1054026

Scaffold Ga0185543_1054026


Overview

Basic Information
Taxon OID3300029318 Open in IMG/M
Scaffold IDGa0185543_1054026 Open in IMG/M
Source Dataset NameMarine giant viral communities collected during Tara Oceans survey from station TARA_038 - TARA_Y100000289
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)848
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameIndian Ocean: TARA_038
CoordinatesLat. (o)19.0393Long. (o)64.4913Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003592Metagenome / Metatranscriptome478Y
F018076Metagenome / Metatranscriptome237N

Sequences

Protein IDFamilyRBSSequence
Ga0185543_10540261F018076N/ANVMDSRYDLVEQDSDFELTARVIYLGRPRTATTFLGLFRRETSRTEVRVIVELKDKKTGVVKSGNGIGTIDREISSTGFQINEELPFDRSELGGALKEAIGNAVQEIL
Ga0185543_10540262F003592GAGGMRFKKYYKDILSLIASLSLLGTVYYINHNDIKQLYRDYATLKLKVESQENQIKTLSSRVDLLAKQNQDLLIDLEEHNKNRGNENTLLLERLQDLEYKVEVLSMKNTLSGGKVFNDRFEFTDKQVNRFGQYETKGQVLVAWKDDYLATKKVNVNTIGEINLKPKIKKLDKDEFVSYIDESY
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