Scaffold Ga0183748_1008861

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183748_1008861

Scaffold Ga0183748_1008861

Overview

Basic Information
Taxon OID	3300029319 Open in IMG/M
Scaffold ID	Ga0183748_1008861 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4340
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium SB2	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Red Sea: TARA_032
Coordinates	Lat. (^o)	23.36	Long. (^o)	37.2183	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F083415	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183748_10088612	F083415	GGTGG	VSDVKTGSDPQQWAICPRQELIHKHIDEHGMVNPIVVDSEGNLQFGGCRLQYAVLREWDEIDAIVCDDPNEIKKLQDEQSLFEYNFLEEQYIERKQQGH

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