NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1039018

Scaffold Ga0183748_1039018


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1039018 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1449
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006530Metagenome371Y
F021866Metagenome217Y
F100994Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10390181F021866N/ACMQESNLQETQLEHDPILKENISWDQAVQKIETVINDVCKEYEKDGHPYYAESLLKHWRRVLKG
Ga0183748_10390183F100994GGAGGMRQKKHKKYDTQFMNYSNADSYYIEVYTNVKRVIKLEALNEEQAIEKALKREEKRRTRNCYLFVDCDYNVVEEKDYEAYRQNYKKIRGRGD
Ga0183748_10390184F006530AGGAGMRLIDRIIKKFEEEAIEFASVGMEEEAKVSRKLASKYTEMKYNGHTHSIRSELQEDERGSKL

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