NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183748_1074173

Scaffold Ga0183748_1074173


Overview

Basic Information
Taxon OID3300029319 Open in IMG/M
Scaffold IDGa0183748_1074173 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_032 - TARA_A100001516
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameRed Sea: TARA_032
CoordinatesLat. (o)23.36Long. (o)37.2183Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018189Metagenome236Y
F057382Metagenome136N
F073646Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0183748_10741733F018189AGGAMELSKEQMEKVIEELESSYNSKIFDDENLIIIINLFKKYLNSGGA
Ga0183748_10741734F057382GGAGGMSKNDLTKAELRQLIDTIVFFQLGARTKELKTIKVKLKNQLKEMESNASI
Ga0183748_10741735F073646N/AMLQSEYLELAIELYNIYSEHKIHHKKWLTARELEKLKGGPGFLAKIKRMKGKMSELKPVFGDYVNRQSQYRSCNTPQQWSCKFDYWLQDEYEFTKEELNELRSDRG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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