Scaffold Ga0243376_107365

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0243376_107365

Scaffold Ga0243376_107365

Overview

Basic Information
Taxon OID	3300029322 Open in IMG/M
Scaffold ID	Ga0243376_107365 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from liver cirrhosis patients in Hangzhou, China - LD-59_Run3
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Zhejiang University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1987
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location Name	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F026592	Metagenome / Metatranscriptome	197	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0243376_1073651	F026592	N/A	CCLRTASPQGIAALAAQGGVATLTERSDATFSVMQFSSADGE

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