Scaffold Ga0243238_100080

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0243238_100080

Scaffold Ga0243238_100080

Overview

Basic Information
Taxon OID	3300029326 Open in IMG/M
Scaffold ID	Ga0243238_100080 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from healthy subjects in Hangzhou, China - HD-62_Run5
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Zhejiang University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	101387
Total Scaffold Genes	105 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	88 (83.81%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Healthy And Liver Cirrhosis Patients In Hangzhou, China

Source Dataset Sampling Location
Location Name	China: Hangzhou
Coordinates	Lat. (^o)	30.0	Long. (^o)	120.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039198	Metagenome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0243238_1000806	F039198	AGGAG	MQITNTEIQGTKYVQIYLTEDELQKKETKDLAQKYKKEKYSVAIFVTGKENYPEILEKIITKQVELNRNVC

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