NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238435_102067

Scaffold Ga0238435_102067


Overview

Basic Information
Taxon OID3300029349 Open in IMG/M
Scaffold IDGa0238435_102067 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3124
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location NameUSA: Iron Gate Dam, Klamath Basin, California
CoordinatesLat. (o)41.93Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000808Metagenome / Metatranscriptome882Y
F003393Metagenome / Metatranscriptome489Y
F005348Metagenome / Metatranscriptome403Y

Sequences

Protein IDFamilyRBSSequence
Ga0238435_1020674F005348AGGMINSVMSFDCNDCNGQGLIFWGNELDYDVEKCDCKNFAIGNLFTTKEAD
Ga0238435_1020677F000808GAGGMDKEYTYALTTSYDGELINTLRVSDMLTAVDAWNKCVDYGFAKEYATYNLSDPTGKMYTKTFYTNGEVVIK
Ga0238435_1020679F003393GAGGMIDLENDDTIAIMDYTKVDILTAGQLMVDDCILIGDEIVSIVDIVSLPDGYTLEIVNDFGEREIIEVGEYDQFDLMMLE
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