NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238435_108296

Scaffold Ga0238435_108296


Overview

Basic Information
Taxon OID3300029349 Open in IMG/M
Scaffold IDGa0238435_108296 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Iron Gate Dam, Klamath Basin, California, USA - IR103
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterOregon State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1005
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Klamath Basin, Usa

Source Dataset Sampling Location
Location NameUSA: Iron Gate Dam, Klamath Basin, California
CoordinatesLat. (o)41.93Long. (o)-122.44Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064663Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0238435_1082964F064663N/AKYFGWDYTKNTQLRMTGKEWHTYAKCELFNYNRGDDSARGSNCEIWLDGTDINHKPPK
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