NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243835_1000837

Scaffold Ga0243835_1000837


Overview

Basic Information
Taxon OID3300029359 Open in IMG/M
Scaffold IDGa0243835_1000837 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 048_3_11_stool_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31018
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (78.57%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097172Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0243835_10008376F097172AGGAGGMKKNVFKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPSVKTGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVVTFDNLQGTDDKSLKCFGGGIYKPVKNGKKYTLEDLYPDEVGDYTTLYENNYLARLRTILDNYKAEHPEYADVIEETYEYKTDFVNTIPTTKIKFTTKLKKRQTYVFIIDNIGMQKAVPPYFTTHGSDEQSCLWGGNYLKAYSFDMNIEYRK
Ga0243835_10008377F097172AGGAGGMKKNVLKKLMCAVLAAACVATAVVPAMADDVITAEAATKKVTSAYRYHIDGYDKKGYPASYSKASFYKDLNSLPAVKMGKTTINVPAVTSSVKSVSKEKGEPRYESFVKFKAPKTGKYVFTIDNLQGTDDKSLKCLSEGIYKPVKEGKKYKLEYLYPDAVGNYGDLYENNYLARLRTIFDNYKAEHPEYADAIDETYNDESEFVNKHPVDKDKFTTKLKKGQTYVFVIDNRGMAEPCKPYLDDFGSDHQSCLSGGNYLAAYSFDMNIEYRK
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