Scaffold Ga0239577_1003392

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0239577_1003392

Scaffold Ga0239577_1003392

Overview

Basic Information
Taxon OID	3300029429 Open in IMG/M
Scaffold ID	Ga0239577_1003392 Open in IMG/M
Source Dataset Name	Oil enriched seawater microbial communities from Gulf of Mexico, USA - BD02T6
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Lawrence Berkeley National Laboratory
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3460
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Oil-Contaminated → Oil Enriched Seawater → Oil Enriched Seawater Microbial Communities From Gulf Of Mexico, Usa

Source Dataset Sampling Location
Location Name	USA: Gulf of Mexico
Coordinates	Lat. (^o)	24.74	Long. (^o)	-88.37	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F101886	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0239577_10033922	F101886	N/A	MLKKIAIIAFCLFNVALFIQIGIDVAAVTPEQAMLEGMTQRIYASISTLDYIMATLWGVILYTILTAKKEYFLRVSWLYLGFYLCDIHFSHYMSIEMNDPYFTPGALALVAVQIGFLFWAKIRINTANFALSN

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