NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0239579_1027603

Scaffold Ga0239579_1027603


Overview

Basic Information
Taxon OID3300029442 Open in IMG/M
Scaffold IDGa0239579_1027603 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Alinen Mustajarvi, Finland - AM13
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUppsala University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From Alinen Mustajarvi, Finland

Source Dataset Sampling Location
Location NameFinland: Alinen Mustajarvi in Hameenlinna
CoordinatesLat. (o)61.208142Long. (o)25.113609Alt. (m)Depth (m)6.1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049375Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0239579_10276031F049375N/ARWNGMVLFVGQIRIKTASDKSFEGTIYINKGNFNYEVRDLMLDRVDFGMKSFASDQEAVDYFNWSLTHFYPEVDFSLPEISNVDFFDPQATNPELMSYNHIFPDGWLHKTTSDGTQRTILIPFLYLKFVLNKLAENFGYRLQDEFFTSSTELSRLVIYNSVNLSEVIFGLQQLYYCRLLPKVKVSEFISGLEKWFNCCFLADSKQRVVRIVSNKDVLLRSEVVEFSKNVLTISQEIPDQITGFRFLLGPDSGDKVYQAQLDAEKGMTDYIKGAVQSFSDIPPYPFTWLGDIYYVVDTNQWWVFGVNGITFLIE
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