NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0243728_1018344

Scaffold Ga0243728_1018344


Overview

Basic Information
Taxon OID3300029444 Open in IMG/M
Scaffold IDGa0243728_1018344 Open in IMG/M
Source Dataset NameHuman feces microbial communities from a cholera patient in hospital, Baltimore, Maryland, USA - 025_10_29_stool_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Genome Sciences, University of Maryland School of Medicine
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2015
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Feces → Human Feces Microbial Communities From Cholera Patients In Hospital, Baltimore, Maryland, Usa

Source Dataset Sampling Location
Location NameUSA: Baltimore
CoordinatesLat. (o)39.28846264Long. (o)-76.62594594Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077319Metagenome117N

Sequences

Protein IDFamilyRBSSequence
Ga0243728_10183442F077319GGAGMQENAVCAANCTVQEKRGGQKIMLIRNATLQMSATERACMDVRVMNGCVWEMGAALVKGLYESETDLCGDVLMPGRMLETPVPAADEKALRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
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