NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000003

Scaffold Ga0183755_1000003


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000003 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)114778
Total Scaffold Genes186 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)85 (45.70%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077971Metagenome / Metatranscriptome117Y
F084870Metagenome / Metatranscriptome112N
F088414Metagenome109Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_1000003146F077971AGGAMPKKNSNKNPTKDEGVYTVDSDKLSYGYVSGTYRDQGCITVTFNDRVQQAWHPHHNHKGGDFKIKPELIVDFLQKIGVTLHFHTDRKHSYCNKIELKPWSEFEQTLRQSIDKNKEYN
Ga0183755_1000003161F084870AGGAGGMLRWDNRERQYHAPFDIIIQTIPEEVRIRDMFDDSINPDTGKSYYDVDYMEQQVENGSAEWSVVNVQCMLNGVELGSFAIGGAYLDEHYDLMSFVYDNGMIDEAKNDAKIWLDNTKEVVY
Ga0183755_100000365F088414N/AMTAKIIKFNSPKIKKSDKGFSESDMMVFDAVELLLEYAHEAGCDINPIIDSRELGEVIRSLLVFFGKMNGVDIEQLNWEQNADISNLYSDNGFLASLDKDKE
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