NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0183755_1000300

Scaffold Ga0183755_1000300


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1000300 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29795
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)39 (84.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018178Metagenome / Metatranscriptome236Y
F039123Metagenome164N
F070064Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100030032F018178N/AMSLVGDRKLDRMDAILTKLSERINEWEGASRQAIEAETNFKSFEASSQKAHMDAGSSAAKAQTETRSGGEWASHYRAVQLANLNAEKLKKQIMLGQLMFDAERTKQANQRRIV
Ga0183755_100030036F070064GGAGGMGRVKCEMFEDDLGPDDELVPLPYSQVLDNIQRCDLPMNSVERYEYMQNQLRGLMNGIRTNTD
Ga0183755_100030039F039123AGGMDKQEFTKLYSQWFALHPFKKRDWQELGKVHYQAFGKESVALMTEALGQLTEELDHFPLPKDIRSKLNKLSSSKTEGGGEKTNSTSESEEIATRLLEHRHGVEYDGVSVKRPENVPAWIEQLVDRVDNDLGVQYPLKAKLGTLGFMVVQTEGRR
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