NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0183755_1009552

Scaffold Ga0183755_1009552


Overview

Basic Information
Taxon OID3300029448 Open in IMG/M
Scaffold IDGa0183755_1009552 Open in IMG/M
Source Dataset NameMarine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterCEA Genoscope
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3924
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location NameMediterranean Sea: TARA_023
CoordinatesLat. (o)42.1735Long. (o)17.7252Alt. (m)Depth (m)55
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008453Metagenome333Y
F026537Metagenome / Metatranscriptome197N
F092864Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0183755_100955210F026537N/AMKQEIIDRLEYVEETYAGEMETWQDPATGNYYHIPIEIVRDWDNSECLEMEEAVRPLNEQQPKRDKMTYERKEEHIRKIAFCISDGASGYVTDNFRIEDLPTPQRTGTMTQQDTYSKHKARQIFGAFLEQNPNIND
Ga0183755_10095524F092864AGCAGGMTNEQAIQIVLENKDPSNAERLAAMYACDDILEADIDVWLSTDVSEYLPQFPDIADSLMEDLLKEDNVSRERMAHSLTEVSRSMYHYVKFYEILSSYDMALSER
Ga0183755_10095529F008453N/AMSNYAVYRVYKDWNKRPRVLMNGLTREEAQTIVKNTPSNDNSMVVFDEEPRNKQWGSR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.