Scaffold Ga0183755_1011729

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183755_1011729

Scaffold Ga0183755_1011729

Overview

Basic Information
Taxon OID	3300029448 Open in IMG/M
Scaffold ID	Ga0183755_1011729 Open in IMG/M
Source Dataset Name	Marine viral communities collected during Tara Oceans survey from station TARA_023 - TARA_E500000082
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	CEA Genoscope
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3375
Total Scaffold Genes	7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	5 (71.43%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → Candidatus Endolissoclinum → unclassified Candidatus Endolissoclinum → Candidatus Endolissoclinum sp. TMED37	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Marine Viral And Eukaryotic Protist Communities Collected From Different Water Depths During Tara Oceans Survey

Source Dataset Sampling Location
Location Name	Mediterranean Sea: TARA_023
Coordinates	Lat. (^o)	42.1735	Long. (^o)	17.7252	Alt. (m)		Depth (m)	55
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F035284	Metagenome / Metatranscriptome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0183755_10117295	F035284	GGA	MNLVQQTQKKKLSEKQETFLTALFENNGNFNRAAEVAGYSVGSVTWLRDSLADEIVERTRAVLAGHSLRAANKMVELVDTPVVERGDDLKLRAAEAILNRVGLGKQETMNHNVQAIHGVVLLPPKKDMVIDG

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