Scaffold Ga0243128_1068460

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0243128_1068460

Scaffold Ga0243128_1068460

Overview

Basic Information
Taxon OID	3300029449 Open in IMG/M
Scaffold ID	Ga0243128_1068460 Open in IMG/M
Source Dataset Name	Sediment microbial communities from Yellow Sea, Weihai, China - HGD.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Shandong University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1024
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sediment → Sediment Microbial Communities From Yellow Sea, Weihai, China

Source Dataset Sampling Location
Location Name	China: Weihai
Coordinates	Lat. (^o)	37.31	Long. (^o)	122.0	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F072820	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0243128_10684601	F072820	AGGAGG	MKPLHQITVDAVTIRGIIDYLEKSVEPVGLHELAMTQHISNGTALRLCRILEKATIIEHPVVTRVVMGASQEVPQLAWQLTKPFFLGGCVYNAEELAGGMA

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