NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0244145_100215

Scaffold Ga0244145_100215


Overview

Basic Information
Taxon OID3300029486 Open in IMG/M
Scaffold IDGa0244145_100215 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI001903-93
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)101473
Total Scaffold Genes95 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)86 (90.53%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F074898Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0244145_10021574F074898GAGVEGHPVDAALLTTPLKLLDGRSPSEALGLLAEDVNKMLDAIPSLYNLPMTLIRDPAFARLFSDLYIAAQTGTISITSEELNRMAASVLGKIYSMEYLDGLNFSDIYHNLLASVVQSSEVARAYRSAMRGYLLSNFRLSGQIGIDKGELLFSQPYQEPYHLTYEQTTPNSWHYLLTTANSDTIDGVLYWRNEYDFALSGYSENQHTAFSVTCSYGSANNFVFIASVDNSFSLSIVQAGSNFSLRLNNENANVFALNANVFSLESTSDYIRVKIYYNYYTLTITPATDGLDIVAQARTFDIFTAHVRTALNGLICTGVYGDTTYRLALTETATGFSLLLSLPDGDFHLDFAALSDTSCSLTFTDAAGQQVSLTGSLCTPASPVIPDTIGTIELTQLLDDLF
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.