NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244795_104135

Scaffold Ga0244795_104135


Overview

Basic Information
Taxon OID3300029518 Open in IMG/M
Scaffold IDGa0244795_104135 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005362-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6309
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Bacteroidales → Bacteroidaceae → Bacteroides(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2123446Long. (o)121.4684853Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F099451Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0244795_10413515F099451AGGAGMEVKNVGQLRKIIENLPDDFEIEMRIRRKLTDEELKNCRYPYPYDTEYLTLEFDDIGVFDKVLCL

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