Scaffold Ga0244821_100967

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0244821_100967

Scaffold Ga0244821_100967

Overview

Basic Information
Taxon OID	3300029523 Open in IMG/M
Scaffold ID	Ga0244821_100967 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from Shanghai Jiao Tong University, China - RSZAXPI005388-57
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	25807
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (85.71%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai Jiao Tong University, China

Source Dataset Sampling Location
Location Name	China: Shanghai
Coordinates	Lat. (^o)	31.2123446	Long. (^o)	121.4684853	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F081354	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0244821_10096710	F081354	AGG	LVYENQQSSAHNFVKDFSLFFPKICRLCPLKKGAVATIPLEYGKAEVQTLFEPLQATISSMKLPKNFENKKLPNTLK

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