NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244948_100066

Scaffold Ga0244948_100066


Overview

Basic Information
Taxon OID3300029540 Open in IMG/M
Scaffold IDGa0244948_100066 Open in IMG/M
Source Dataset NameHuman fecal microbial communities from Shanghai, China - P049V6
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterBeijing Genomics Institute (BGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)147090
Total Scaffold Genes141 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)129 (91.49%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes → Clostridia → Eubacteriales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Shanghai, China

Source Dataset Sampling Location
Location NameChina: Shanghai
CoordinatesLat. (o)31.2112312Long. (o)121.4647709Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077319Metagenome117N
F082715Metagenome / Metatranscriptome113N

Sequences

Protein IDFamilyRBSSequence
Ga0244948_100066104F077319GGAGGMLIRNATLQMSATECACMDVRVMNGCVWEMGAALVKGLYESEIDLCGDVLMPGRMLETPIPAADEKTLRLLCRRLYREGVRYFVADCPADALLRVQNRPERRGALPVTALPNPEPLRSGTGMPLTRWTAAGEFVGMMDEHSGD
Ga0244948_10006692F082715AGGAGMMKFMKRALSLLISAMLLLGCFALAEETPLLPIAIVSYDLTDEATTATLSALIEPKENALTRWERVVLSDGREAWVICQFDQTTMSNAWSRVIDAETQEVLQEDTTDTGFFATAQARWESAKGIYALWSIQDKMLFDRLYAMAPCYGEPVEGDLTQEEALAAALNVTGLTTADYDAVGYGYIMGSSEQNGTWQVFFVKGSEVISTVNLDARDATILLVEPDEEGNG
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