NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0311280_108579

Scaffold Ga0311280_108579


Overview

Basic Information
Taxon OID3300029569 Open in IMG/M
Scaffold IDGa0311280_108579 Open in IMG/M
Source Dataset NameModerately acidic thermal spring sediment microbial community from Yellowstone National Park, USA - MV2 Spring
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Wisconsin, Madison
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location NameUSA: Yellowstone National Park, Wyoming
CoordinatesLat. (o)44.61003889Long. (o)-110.43943056Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F063429Metagenome / Metatranscriptome129N

Sequences

Protein IDFamilyRBSSequence
Ga0311280_1085791F063429GAGMGNPDVYEEQMNIAEHIKSAFIDSFEQDIKNGIVPWADADRIIEYMDYMVREGLDSEGLIEYLAKRSGIDLDAFKQMWAKLSDEQKEDLLDEITHYIALDGFKELIKAISDDLTQQRKYRKYRGQILKTALDYAFNEKGVDYDGLEDEIVSVFWPESKKKKDEKAYEDFVRGLELANYLDEEEVAEVIVIFLIYWLAEKC
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