Scaffold Ga0245124_1000811

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0245124_1000811

Scaffold Ga0245124_1000811

Overview

Basic Information
Taxon OID	3300029622 Open in IMG/M
Scaffold ID	Ga0245124_1000811 Open in IMG/M
Source Dataset Name	Human fecal microbial communities from twins in the TwinsUK registry in London, United Kingdom - YSZC12003_35733
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Beijing Genomics Institute (BGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	49329
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	47 (95.92%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Firmicutes	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Human → Digestive System → Large Intestine → Fecal → Human Fecal → Human Fecal Microbial Communities From Twins In The Twinsuk Registry In London, United Kingdom

Source Dataset Sampling Location
Location Name	United Kingdom: London
Coordinates	Lat. (^o)	51.5	Long. (^o)	-0.12	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F042910	Metagenome	157	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0245124_100081114	F042910	AGGAGG	LADRLYCALNGTTLHDLDARIHLLDVEELAPTVRTVTANRIGGGLHLLRRQREQLSLRVRFLIEEYDIAARHQLLHLVAAWAEAGGVLTLHEDGKRVLRVVCTQYPTMSTLNWLETLSLVFTAFSCPYWEDAAETSFLMPNTSDAPSKLLAVPGDAPETPLNLLIRNIGDTAITTLTISAAGKISFQGLTLAPGAAIRIHHDAGVFAAEMVSDDSTVSILPYRTPESADDLLLRPGVLNEIRVEAGSAAFVSGRCKGRYC

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