Scaffold Ga0311297_1021506

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311297_1021506

Scaffold Ga0311297_1021506

Overview

Basic Information
Taxon OID	3300029625 Open in IMG/M
Scaffold ID	Ga0311297_1021506 Open in IMG/M
Source Dataset Name	Mildly acidic thermal spring sediment microbial community from Yellowstone National Park, USA - SJ3 Spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4425
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Smokejumper Geyser Basin, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.41595	Long. (^o)	-110.95576667	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F104050	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311297_10215067	F104050	AGGTGG	VSEVKKCIIGLRRHCIVYDALVSDERQKYGTKEFVITYCGMCIKATYAKAKKKLMSKFSVVNTL

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