Scaffold Ga0311297_1324552

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311297_1324552

Scaffold Ga0311297_1324552

Overview

Basic Information
Taxon OID	3300029625 Open in IMG/M
Scaffold ID	Ga0311297_1324552 Open in IMG/M
Source Dataset Name	Mildly acidic thermal spring sediment microbial community from Yellowstone National Park, USA - SJ3 Spring
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Wisconsin, Madison
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1737
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Caldivirga → unclassified Caldivirga → Caldivirga sp. MU80	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Hot Spring → Thermal Spring Sediment Microbial Community From Yellowstone National Park, Usa

Source Dataset Sampling Location
Location Name	Smokejumper Geyser Basin, Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.41595	Long. (^o)	-110.95576667	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F099548	Metagenome	103	Y
F101501	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311297_13245522	F101501	GAGG	LRENTSAIRSIVGSRFHGDYIGYGLDPIPFLIIRVGGSLIEVPITHTVFRQVLEKAYRVLEGYEKRRLLAYEASGIFKVQPYIIQLLILDAIQLGKLLGIKDANTLVKTLLEHPLSRERATLLGRRGVEWLVRAMTEVGLLAP
Ga0311297_13245524	F099548	AGGCGG	VARVIVITIKGAPGDCVSITPSMIGDGGLVGEALRLLHALYIHGILDRSHGSYTLCSTDNPILWAMVKVLPIDEAVAWLMWLIE

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