NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0238865_11073

Scaffold Ga0238865_11073


Overview

Basic Information
Taxon OID3300029631 Open in IMG/M
Scaffold IDGa0238865_11073 Open in IMG/M
Source Dataset NameSeawater microbial communities from Ross Sea, Antarctic Ocean - 124LC-38360620
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterInstitute for Systems Biology
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1286
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Seawater → Seawater Microbial Communities From Ross Sea, Antarctic Ocean

Source Dataset Sampling Location
Location NameSouthern Ocean: Ross Sea
CoordinatesLat. (o)-76.4986Long. (o)-179.9884Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052205Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0238865_110733F052205AGGAMSLSNQDIDELFDGKPSELTYSQWLTIEGNIDFTSLTTTMKADILNRINDLSEEEAEVIITKLYNNRYEKDPQKQWLRMLKDGVFNYRDF
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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