NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0135217_100234

Scaffold Ga0135217_100234


Overview

Basic Information
Taxon OID3300029635 Open in IMG/M
Scaffold IDGa0135217_100234 Open in IMG/M
Source Dataset NameMarine harbor viral communities from the Indian Ocean - SMH2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMichigan State University
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1717
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Harbor → Unclassified → Marine Harbor → Marine Harbor Viral Communities From The Pacific And Indian Ocean

Source Dataset Sampling Location
Location NameIndian Ocean
CoordinatesLat. (o)1.26600833Long. (o)103.8333333Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001190Metagenome / Metatranscriptome753Y
F020527Metagenome / Metatranscriptome223Y

Sequences

Protein IDFamilyRBSSequence
Ga0135217_1002343F001190N/AMASTPTGQTGSDDYFDISKFEELLNRLEASKGRQQRQKSLEGRRDIFATGLAGMMGNFX
Ga0135217_1002344F020527N/AYRAKYDLVPGLQGQQLTSYYIEELLPGRRETGAKAAYEEILGRSATAEELQKAQERFDTGYYGSVKELKDSLYKGQEYQKKFNKSYLENYYDTQFGEQTTDAEGERTGKRTFQFDKSLLPNYNADLQGRTGITTPDFKDSFVGTPGEIQEQLQNVRDTRQYLYSAGLTNLQGEINKETTKLKVEGQKELQKIKDEGGIYRDLVGRFSF
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